PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G049300.1
Common NameB456_005G049300, LOC105796722
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 220aa    MW: 24659.5 Da    PI: 5.2142
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G049300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1884133355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  Gorai.005G049300.1  84 YRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFAMRG 133
                         9*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-2283143IPR016177DNA-binding domain
PROSITE profilePS5103223.27583141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3083142IPR001471AP2/ERF domain
SMARTSM003801.4E-3683147IPR001471AP2/ERF domain
CDDcd000184.28E-2084142No hitNo description
PRINTSPR003673.2E-108495IPR001471AP2/ERF domain
PfamPF008471.8E-1384133IPR001471AP2/ERF domain
PRINTSPR003673.2E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MESFHFHSPN SNCSSESSFG SPEFFPLDHN SLPFNENDSE EMLLYGLLAE AKQETSSELT  60
YPNQVKEEEV TSIDIESPTK EKAYRGVRRR PWGKFAAEIR DSTRNGVRVW LGTFDSAEAA  120
ALAYDQAAFA MRGSAAILNF PVEKVRESLR EMKCNQEDGG SPVVALKRKH SMRRKMVSRN  180
KKERESGGVR INNAVVFEDL GPDFLEQLLT TCDQAATPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-2879142164ATERF1
2gcc_A3e-2879142164ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481968.11e-164PREDICTED: ethylene-responsive transcription factor 1B
SwissprotQ8LDC81e-76ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2PMT31e-164A0A0D2PMT3_G
STRINGPOPTR_0010s08300.11e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-65ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]